Description Usage Arguments Value Examples
View source: R/SINTER_functions.R
This function is used for summarizing scATAC-seq data according to ENCODE clusters.
1 |
path |
Directory to bam files of scATAC-seq data |
gr_ENCL |
GRanges object for ENCODE clusters |
type |
Sequencing read type. "paired" or "single" end read. |
data |
Log2-transformed summarized data matrix. |
lib |
Total read counts (i.e., library size) for each single cell. |
1 2 3 4 |
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