Description Usage Arguments Value Examples

View source: R/SINTER_functions.R

This function is used run MNN to correct for platform effects between the experimental and predicted scATAC-seq data.

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`atac_data` |
scATAC-seq data for matching. |

`pre_result` |
Predicted scATAC-seq data based on scRNA-seq. |

`k` |
The number of mutual nearest neighbor in MNN. |

`sigma` |
The bandwidth of the Gaussian smoothing kernel used to compute the correction vector. |

`MNN_ref` |
A flag to determine which data type is used as reference in MNN. Select from "scATAC" and "scRNA". |

`data_combine` |
The combined data matrix from all single cells. |

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