API for WilliamSalvidge/dictyChipSeq
What the Package Does (One Line, Title Case)
| Global functions | |
|---|---|
| SplitIntoBins | Man page |
| actualDropSeqLevels | Source code |
| addExpValueAndSample | Man page |
| addExtraAnnotation | Man page Source code |
| addGeneIdToIndex | Man page Source code |
| addSampleToNewList | Source code |
| add_broadPeak_columnNames | Man page |
| add_narrowPeak_columnNames | Man page |
| annotatePeaksSeq | Man page Source code |
| bin_search | Source code |
| coerceTagMatrixListFromDifferentRepsTogether | Source code |
| dropDictyChromosomes | Man page Source code |
| getBinsAndSet1BetweenReps | Source code |
| getSet1DEGS | Source code |
| getTagMatricesForDiffExpLevelBins | Man page Source code |
| getTagMatrixWill | Man page |
| lApplyFunction | Source code |
| mainPipeLine | Man page Source code |
| makeAx4TPM | Man page Source code |
| makeDictyGenes | Man page Source code |
| makeDictyGrangesfromTxDb | Man page Source code |
| makeDictyPromotersGrangesObject | Man page Source code |
| peakGRangesOrganisedBySample | Source code |
| plotFunctionWillDictyChip | Man page Source code |
| rearrangeTagMatricesBasedOnSample | Man page Source code |
| selectPromoterGRangesBasedOnTagMatrixIndex | Man page Source code |
| set1DegOverlapNumbers | Man page |
