addGeneIdToIndex: addGeneIdToIndex
In WilliamSalvidge/dictyChipSeq: What the Package Does (One Line, Title Case)
View source: R/addGeneIdToIndex.R
addGeneIdToIndex R Documentation
addGeneIdToIndex
Description
Shrinks Genes GRange down to 3bp width around the TSS. The Genes GRAnge has a geneID associated with it.
Individual promoter GRanges are shrunk to 3bp around the TSS as well.
In theory the promoter and gene GRanges are the same. E.g. DDB0232428 100-103 is the same in both dataframes.
We can now connect the index in the promoter GRange to a geneID!
Usage
addGeneIdToIndex(x, y)
Arguments
x
output from selectPromoterGRangesBasedOnTagMatrixIndex()
y
output from makeDictyGenesGRangesObject()
Value
List. Each List also a list containing two GRanges. The first GRange is the interesting part. Contains the Windows / Promoters GRange from
selectPromoterGRangesBasedOnTagMatrixIndex() but with GeneId added. You can chgeck against TestGRanges I think they should be the same.
WilliamSalvidge/dictyChipSeq documentation built on March 28, 2023, 1:27 a.m.
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View source: R/addGeneIdToIndex.R
| addGeneIdToIndex | R Documentation |
addGeneIdToIndex
Description
Shrinks Genes GRange down to 3bp width around the TSS. The Genes GRAnge has a geneID associated with it. Individual promoter GRanges are shrunk to 3bp around the TSS as well. In theory the promoter and gene GRanges are the same. E.g. DDB0232428 100-103 is the same in both dataframes. We can now connect the index in the promoter GRange to a geneID!
Usage
addGeneIdToIndex(x, y)
Arguments
x |
output from selectPromoterGRangesBasedOnTagMatrixIndex() |
y |
output from makeDictyGenesGRangesObject() |
Value
List. Each List also a list containing two GRanges. The first GRange is the interesting part. Contains the Windows / Promoters GRange from selectPromoterGRangesBasedOnTagMatrixIndex() but with GeneId added. You can chgeck against TestGRanges I think they should be the same.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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