makeDictyGrangesfromTxDb: makeDictyGrangesfromTxDb

In WilliamSalvidge/dictyChipSeq: What the Package Does (One Line, Title Case)

makeDictyGrangesfromTxDb

Description

Not totally sure how this works so maybe come back and edit later. using the biomaRt package we establish to a connection to ensembl protist database I think. We then get the D. discoideum TxDb or transcript database from there. What we get is a TxDb object. We can call things like the GenomicFeatures::genes function on this to get a GRanges of genes.

Usage

makeDictyGrangesfromTxDb()

Value

TxDb object

WilliamSalvidge/dictyChipSeq documentation built on March 28, 2023, 1:27 a.m.