selectPromoterGRangesBasedOnTagMatrixIndex: selectPromoterGRangesBasedOnTagMatrixIndex

In WilliamSalvidge/dictyChipSeq: What the Package Does (One Line, Title Case)

selectPromoterGRangesBasedOnTagMatrixIndex

Description

selectPromoterGRangesBasedOnTagMatrixIndex

Usage

selectPromoterGRangesBasedOnTagMatrixIndex(x)

Arguments

x	Output from getTagMatricesForDiffExpLevelBins which will likely be a list of tagMatrices and Windows / Promoters GRanges with index column

Value

A new list. Each element is based on one of the incoming tagMatrices in the input list. Each element in the new list is also a list. These elements show the Promoter GRange object subsetted by the rownames of the tagMatrix. Where the rowname of the tagMatrix matches the index column in the Windows / Promoter GRange object, that row is returned. This is also done in a strand specific way to generate + and - strand Promoter GRange objects.

WilliamSalvidge/dictyChipSeq documentation built on March 28, 2023, 1:27 a.m.