Files in WilliamSalvidge/dictyChipSeq
What the Package Does (One Line, Title Case)

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/actualDropSeqLevels.R R/addBroadPeakColumnNames.R R/addExpValueAndSample.R R/addExtraAnnotation.R R/addGeneIdToIndex.R R/addNarrowPeakColumnNames.R R/annotatePeaksSeq.R R/coerceTagMatrixListFromDifferentRepsTogether.R R/dropDictyChromosomes.R R/getBinsAndSet1BetweenReps.R R/getSet1DEGs.R R/getTagMatricesForDiffExpLevelBins.R R/main_pipeline.R R/makeAx4TPM.R R/makeDictyGenesGRangesObject.R R/makeDictyGrangesfromTxDb.R R/makeDictyPromotersGRangesObject.R R/peakGRangesOrganisedBySample.R R/plotFunctionWillDictyChip.R R/rearrangeTagMatricesBasedOnSample.R R/selectPromoterGRangesBasedOnTagMatrixIndex.R R/set1DegOverlapNumbers.R R/splitIntoBins.R R/willAmendedGetTagMatrix.R README.md

dictyChipSeqPackage.Rproj

man/SplitIntoBins.Rd man/addExpValueAndSample.Rd man/addExtraAnnotation.Rd man/addGeneIdToIndex.Rd man/add_broadPeak_columnNames.Rd man/add_narrowPeak_columnNames.Rd man/annotatePeaksSeq.Rd man/dropDictyChromosomes.Rd man/getTagMatricesForDiffExpLevelBins.Rd man/getTagMatrixWill.Rd man/mainPipeLine.Rd man/makeAx4TPM.Rd man/makeDictyGenes.Rd man/makeDictyGrangesfromTxDb.Rd man/makeDictyPromotersGrangesObject.Rd man/plotFunctionWillDictyChip.Rd man/rearrangeTagMatricesBasedOnSample.Rd man/selectPromoterGRangesBasedOnTagMatrixIndex.Rd man/set1DegOverlapNumbers.Rd

WilliamSalvidge/dictyChipSeq documentation built on March 28, 2023, 1:27 a.m.

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