scAnnotator.SingleR: Automatic annotation of cell types using SingleR

In WubingZhang/scAnalyzer: Integrative analysis pipeline for analyzing single-cell RNA-seq data

Automatic annotation of cell types using SingleR

Description

Automatic annotation of cell types using SingleR

Usage

scAnnotator.SingleR(
  query.obj,
  group.by = "seurat_clusters",
  ref.data = NULL,
  ref.ann = NULL
)

Arguments

query.obj	A seurat object for cell type annotation.
group.by	A character specifying the cluster column in meta.data.
ref.data	A matrix like object specifying the reference data or a Seurat object.
ref.ann	A vector specifying the cell type annotation of the reference data.

Value

A data frame with singleR prediction scores.

Author(s)

Wubing Zhang

WubingZhang/scAnalyzer documentation built on Jan. 30, 2023, 10:11 p.m.