scNormalize: Normalization of single-cell RNA-seq read counts

In WubingZhang/scAnalyzer: Integrative analysis pipeline for analyzing single-cell RNA-seq data

Normalization of single-cell RNA-seq read counts

Description

Normalization of single-cell RNA-seq read counts

Usage

scNormalize(
  counts,
  norm.method = c("LogNormalize", "SCT", "downsample", "quminorm", "census"),
  mc.cores = 4,
  fraction = 0.85
)

Arguments

counts	A matrix.
norm.method	One of LogNormalize, SCTransform, downsample, quminorm, and census.
mc.cores	An integer, specifying the number of cores for quminorm and downsample normalization.
fraction	A numeric between 0 and 1, specifying the fraction of cells to be downsampling normalized.

Value

A normalized count matrix.

Author(s)

Wubing Zhang

WubingZhang/scAnalyzer documentation built on Jan. 30, 2023, 10:11 p.m.