Files in YTLogos/myTAI
Evolutionary Transcriptomics
.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/CollapseReplicates.R
R/DiffGenes.R
R/EarlyConservationTest.R
R/EnrichmentTest.R
R/Expressed.R
R/FlatLineTest.R
R/GroupDiffs.R
R/MatchMap.R
R/PlotBarRE.R
R/PlotCIRatio.R
R/PlotCategoryExpr.R
R/PlotContribution.R
R/PlotCorrelation.R
R/PlotDistribution.R
R/PlotEnrichment.R
R/PlotGeneSet.R
R/PlotGroupDiffs.R
R/PlotMeans.R
R/PlotMedians.R
R/PlotPattern.R
R/PlotRE.R
R/PlotReplicateQuality.R
R/PlotSelectedAgeDistr.R
R/PlotSignature.R
R/PlotVars.R
R/RcppExports.R
R/ReductiveHourglassTest.R
R/SelectGeneSet.R
R/TAI.R
R/TDI.R
R/TPI.R
R/age.apply.R
R/base.R
R/bootMatrix.R
R/combinatorialSignificance.R
R/custom.myTAI.cols.R
R/datasets.R
R/ecScore.R
R/geom.mean.R
R/harm.mean.R
R/is.ExpressionSet.R
R/omitMatrix.R
R/pMatrix.R
R/pStrata.R
R/pTAI.R
R/pTDI.R
R/rel_exp.R
R/rhScore.R
R/taxid.R
R/taxonomy.R
R/tf.R
README.md
cran-comments.md
data/DivergenceExpressionSetExample.rda
data/PhyloExpressionSetExample.rda
inst/CITATION
man/CollapseReplicates.Rd
man/DiffGenes.Rd
man/DivergenceExpressionSetExample.Rd
man/EarlyConservationTest.Rd
man/EnrichmentTest.Rd
man/Expressed.Rd
man/FlatLineTest.Rd
man/GroupDiffs.Rd
man/MatchMap.Rd
man/PhyloExpressionSetExample.Rd
man/PlotBarRE.Rd
man/PlotCIRatio.Rd
man/PlotCategoryExpr.Rd
man/PlotContribution.Rd
man/PlotCorrelation.Rd
man/PlotDistribution.Rd
man/PlotEnrichment.Rd
man/PlotGeneSet.Rd
man/PlotGroupDiffs.Rd
man/PlotMeans.Rd
man/PlotMedians.Rd
man/PlotPattern.Rd
man/PlotRE.Rd
man/PlotReplicateQuality.Rd
man/PlotSelectedAgeDistr.Rd
man/PlotSignature.Rd
man/PlotVars.Rd
man/RE.Rd
man/REMatrix.Rd
man/ReductiveHourglassTest.Rd
man/SelectGeneSet.Rd
man/TAI.Rd
man/TDI.Rd
man/TPI.Rd
man/age.apply.Rd
man/bar.colors.Rd
man/bootMatrix.Rd
man/combinatorialSignificance.Rd
man/ecScore.Rd
man/geom.mean.Rd
man/harm.mean.Rd
man/is.ExpressionSet.Rd
man/omitMatrix.Rd
man/pMatrix.Rd
man/pStrata.Rd
man/pTAI.Rd
man/pTDI.Rd
man/rhScore.Rd
man/taxid.Rd
man/taxonomy.Rd
man/tf.Rd
src/RcppExports.cpp
src/rcpp_funcs.cpp
src/registerDynamicSymbol.c
tests/testthat.R
tests/testthat/test-CollapseReplicates.R
tests/testthat/test-CombinatorialSignificance.R
tests/testthat/test-DiffGenes.R
tests/testthat/test-EarlyConservationTest.R
tests/testthat/test-Expressed.R
tests/testthat/test-FlatLineTest.R
tests/testthat/test-MatchMap.R
tests/testthat/test-PlotBarRE.R
tests/testthat/test-PlotContribution.R
tests/testthat/test-PlotCorrelation.R
tests/testthat/test-PlotDistribution.R
tests/testthat/test-PlotEnrichment.R
tests/testthat/test-PlotGeneSet.R
tests/testthat/test-PlotMeans.R
tests/testthat/test-PlotPattern.R
tests/testthat/test-PlotRE.R
tests/testthat/test-RE.R
tests/testthat/test-REMatrix.R
tests/testthat/test-ReductiveHourglassTest.R
tests/testthat/test-TAI.R
tests/testthat/test-TDI.R
tests/testthat/test-age.apply.R
tests/testthat/test-bootMatrix.R
tests/testthat/test-ecScore.R
tests/testthat/test-geom.mean.R
tests/testthat/test-harm.mean.R
tests/testthat/test-omitMatrix.R
tests/testthat/test-pMatrix.R
tests/testthat/test-pStrata.R
tests/testthat/test-pTAI.R
tests/testthat/test-pTDI.R
tests/testthat/test-rhScore.R
tests/testthat/test-taxid.R
tests/testthat/test-taxonomy.R
tests/testthat/test-tf.R
vignettes/Advanced.Rmd
vignettes/Enrichment.Rmd
vignettes/Expression.Rmd
vignettes/Figures/Fig1.png
vignettes/Figures/Fig2.png
vignettes/Figures/Fig3.png
vignettes/Figures/Fig4.png
vignettes/Intermediate.Rmd
vignettes/Introduction.Rmd
vignettes/Taxonomy.Rmd
