omitMatrix: Compute TAI or TDI Profiles Omitting a Given Gene
In YTLogos/myTAI: Evolutionary Transcriptomics
Description
Usage
Arguments
Value
Author(s)
Examples
Description
For each gene i, exclude the corresponding gene i from the global
PhyloExpressionSet or DivergenceExpressionSet and compute the TAI or TDI
profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet
with excluded gene i.
This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.
Usage
1
omitMatrix(ExpressionSet)
Arguments
ExpressionSet
a standard PhyloExpressionSet or DivergenceExpressionSet object.
Value
a numeric matrix storing TAI or TDI profile for each omitted gene i.
Author(s)
Hajk-Georg Drost
Examples
1
2
3
4
5
6
7
8
9
# read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)
# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)
# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)
YTLogos/myTAI documentation built on May 19, 2019, 1:46 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
For each gene i, exclude the corresponding gene i from the global
PhyloExpressionSet or DivergenceExpressionSet and compute the TAI or TDI
profile for the corresponding global PhyloExpressionSet or DivergenceExpressionSet
with excluded gene i.
This procedure results in a TAI or TDI profile Matrix storing the TAI or TDI profile for each omitted gene i.
Usage
1 | omitMatrix(ExpressionSet)
|
Arguments
ExpressionSet |
a standard PhyloExpressionSet or DivergenceExpressionSet object. |
Value
a numeric matrix storing TAI or TDI profile for each omitted gene i.
Author(s)
Hajk-Georg Drost
Examples
1 2 3 4 5 6 7 8 9 | # read standard phylotranscriptomics data
data(PhyloExpressionSetExample)
data(DivergenceExpressionSetExample)
# example PhyloExpressionSet
omMatrix_ps <- omitMatrix(PhyloExpressionSetExample)
# example DivergenceExpressionSet
omMatrix_ds <- omitMatrix(DivergenceExpressionSetExample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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