pStrata: Compute Partial Strata Values
In YTLogos/myTAI: Evolutionary Transcriptomics
Description
Usage
Arguments
Author(s)
Examples
Description
This function computes the partial TAI or TDI
values for all Phylostrata or Divergence Strata.
Usage
1
pStrata(ExpressionSet)
Arguments
ExpressionSet
a standard PhyloExpressionSet or DivergenceExpressionSet object.
Author(s)
Hajk-Georg Drost
Examples
1
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10
data(PhyloExpressionSetExample)
# compute partial TAI values for each Phylostratum
partialStrata <- pStrata(PhyloExpressionSetExample)
# show that colSums of pStrata is equavalent to the TAI values
all.equal(colSums(partialStrata),TAI(PhyloExpressionSetExample))
# show that colSums of pStrata is equavalent to colSums of pMatrix(PhyloExpressionSetExample)
all.equal(colSums(partialStrata),colSums(pMatrix(PhyloExpressionSetExample)))
YTLogos/myTAI documentation built on May 19, 2019, 1:46 a.m.
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Description Usage Arguments Author(s) Examples
Description
This function computes the partial TAI or TDI
values for all Phylostrata or Divergence Strata.
Usage
1 | pStrata(ExpressionSet)
|
Arguments
ExpressionSet |
a standard PhyloExpressionSet or DivergenceExpressionSet object. |
Author(s)
Hajk-Georg Drost
Examples
1 2 3 4 5 6 7 8 9 10 | data(PhyloExpressionSetExample)
# compute partial TAI values for each Phylostratum
partialStrata <- pStrata(PhyloExpressionSetExample)
# show that colSums of pStrata is equavalent to the TAI values
all.equal(colSums(partialStrata),TAI(PhyloExpressionSetExample))
# show that colSums of pStrata is equavalent to colSums of pMatrix(PhyloExpressionSetExample)
all.equal(colSums(partialStrata),colSums(pMatrix(PhyloExpressionSetExample)))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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