HapDipKinship-package: HapDipKinship: HapDipKinship: Kinship estimation in...
In YenWenWang/HapDipKinship: HapDipKinship: Kinship estimation in haploid-diploid populations
HapDipKinship-package R Documentation
HapDipKinship: HapDipKinship: Kinship estimation in haploid-diploid populations
Description
This package is for estimating kinship and simulating pedigrees in a haploid-diploid mixed dataset.
Details
New algorithms are developed to estimate kinships among haploid and diploid individuals.
They are largely inspired by KING-robust (Manichaikul, et al. 2010).
The package also offers some simple simulation to test the algorithms.
Author(s)
Maintainer: Yen-Wen Wang yen-wen.wang@yale.edu (ORCID)
References
Wang, Y-W and Ané, C. 2022. KIMGENS: A novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure. Bioinformatics 38(11):3044-3050.
Manichaikul, et al. 2010. Robust relationship inference in genome-wide association studies. Bioinformatics 26(22): 2867–2873.
YenWenWang/HapDipKinship documentation built on Jan. 20, 2025, 10:09 a.m.
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| HapDipKinship-package | R Documentation |
HapDipKinship: HapDipKinship: Kinship estimation in haploid-diploid populations
Description
This package is for estimating kinship and simulating pedigrees in a haploid-diploid mixed dataset.
Details
New algorithms are developed to estimate kinships among haploid and diploid individuals. They are largely inspired by KING-robust (Manichaikul, et al. 2010). The package also offers some simple simulation to test the algorithms.
Author(s)
Maintainer: Yen-Wen Wang yen-wen.wang@yale.edu (ORCID)
References
Wang, Y-W and Ané, C. 2022. KIMGENS: A novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure. Bioinformatics 38(11):3044-3050. Manichaikul, et al. 2010. Robust relationship inference in genome-wide association studies. Bioinformatics 26(22): 2867–2873.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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