dipking: Diploid-diploid kinship estimation

In YenWenWang/HapDipKinship: HapDipKinship: Kinship estimation in haploid-diploid populations

Diploid-diploid kinship estimation

Description

Estimate kinship for a pair of diploid individuals.

Usage

dipking(dip1, dip2, dipref = NA)

Arguments

dip1, dip2	Vectors encoding the genotype of diploid individuals (0,1,2).
dipref	A vector encoding the genotype of the reference diploid individual (0,1,2). Perform exKING-robust if none provided.

Examples

##Calculate kinship of a pair of full siblings
dip<-rbinom(1000,2,0.5)
hap<-rbinom(1000,1,0.5)
### without reference(exKING-robust)
dipking(anastomosis(meiosis(dip),hap),anastomosis(meiosis(dip),hap1))
### with reference(KIMGENS)
dipking(anastomosis(meiosis(dip),hap),anastomosis(meiosis(dip),hap1),dipref=dip1)

YenWenWang/HapDipKinship documentation built on Jan. 20, 2025, 10:09 a.m.