CARD.visualize.prop: Visualize the spatial distribution of cell type proportion

In YingMa1993/CARD: Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics

Visualize the spatial distribution of cell type proportion

Description

Visualize the spatial distribution of cell type proportion

Usage

CARD.visualize.prop(
  proportion,
  spatial_location,
  ct.visualize = ct.visualize,
  colors = c("lightblue", "lightyellow", "red"),
  NumCols,
  pointSize = 3
)

Arguments

proportion	Data frame, cell type proportion estimated by CARD in either original resolution or enhanced resolution.
spatial_location	Data frame, spatial location information.
ct.visualize	Vector of selected cell type names that are interested to visualize
colors	Vector of color names that you want to use, if NULL, we will use the default color scale c("lightblue","lightyellow","red")
NumCols	Numeric, number of columns in the figure panel, it depends on the number of cell types you want to visualize.

Value

Returns a ggplot2 figure.

YingMa1993/CARD documentation built on Feb. 14, 2024, 12:24 p.m.