getWeightForCell: The function to estimate the cell type composition signature...
In YingMa1993/CARD: Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics
View source: R/CARD.SCMapping.R
getWeightForCell R Documentation
The function to estimate the cell type composition signature for each single cell in the scRNaseq reference data
Description
The function to estimate the cell type composition signature for each single cell in the scRNaseq reference data
Usage
getWeightForCell(sc_eset, ct.varname, ct.select, sample.varname, B)
Arguments
sc_eset
the sc_eset stored in the CARD object
ct.varname
character, the name of the column in metaData that specifies the cell type annotation information, stored in the CARD object
ct.select
vector of cell type names that you are interested in to deconvolute, default as NULL. stored in the CARD object
sample.varname
character,the name of the column in metaData that specifies the sample information. stored in the CARD object
B
reference basis matrix stored in the CARD object.
Value
Returns a matrix of the cell type composition signature for each single cell in the scRNaseq reference
YingMa1993/CARD documentation built on Feb. 14, 2024, 12:24 p.m.
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View source: R/CARD.SCMapping.R
| getWeightForCell | R Documentation |
The function to estimate the cell type composition signature for each single cell in the scRNaseq reference data
Description
The function to estimate the cell type composition signature for each single cell in the scRNaseq reference data
Usage
getWeightForCell(sc_eset, ct.varname, ct.select, sample.varname, B)
Arguments
sc_eset |
the sc_eset stored in the CARD object |
ct.varname |
character, the name of the column in metaData that specifies the cell type annotation information, stored in the CARD object |
ct.select |
vector of cell type names that you are interested in to deconvolute, default as NULL. stored in the CARD object |
sample.varname |
character,the name of the column in metaData that specifies the sample information. stored in the CARD object |
B |
reference basis matrix stored in the CARD object. |
Value
Returns a matrix of the cell type composition signature for each single cell in the scRNaseq reference
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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