CARDfree: SpatialDeconv function based on Conditional Autoregressive...

In YingMa1993/CARD: Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics

SpatialDeconv function based on Conditional Autoregressive model

Description

SpatialDeconv function based on Conditional Autoregressive model

Usage

CARDfree(
  XinputIn,
  UIn,
  WIn,
  phiIn,
  max_iterIn,
  epsilonIn,
  initV,
  initb,
  initSigma_e2,
  initLambda
)

Arguments

XinputIn	The input of normalized spatial data
UIn	The input of cell type specific basis matrix B
WIn	The constructed W weight matrix from Gaussian kernel
phiIn	The phi value
max_iterIn	Maximum iterations
epsilonIn	epsilon for convergence
initV	Initial matrix of cell type compositions V
initb	Initial vector of cell type specific intercept
initSigma_e2	Initial value of residual variance
initLambda	Initial vector of cell type sepcific scalar.

Value

A list

YingMa1993/CARD documentation built on Feb. 14, 2024, 12:24 p.m.