Files in YuLab-SMU/MicrobiomeProfiler
An R/shiny package for microbiome functional enrichment analysis
.Rbuildignore
.generate.sysdata.R
.gitignore
DESCRIPTION
Makefile
NAMESPACE
NEWS.md
R/MicrobiomeProfiler-package.R
R/app_config.R
R/app_server.R
R/app_ui.R
R/data.R
R/enrichCOG.R
R/enrichHMDB.R
R/enrichKO.R
R/enrichMBKEGG.R
R/enrichMDA.R
R/enrichModule.R
R/enrichSMPDB.R
R/globals.R
R/gson_KO.R
R/gson_PubChemPathway.R
R/mod_GENEenrichment.R
R/mod_MDenrichment.R
R/mod_Metaboenrichment.R
R/run_MicrobiomeProfiler.R
R/sysdata.rda
README.md
data/Psoriasis_data.rda
data/Rat_data.rda
data/microbiota_taxlist.rda
inst/app/www/custom.css
inst/app/www/favicon.ico
inst/golem-config.yml
man/MicrobiomeProfiler-package.Rd
man/Psoriasis_data.Rd
man/Rat_data.Rd
man/enrichCOG.Rd
man/enrichHMDB.Rd
man/enrichKO.Rd
man/enrichMBKEGG.Rd
man/enrichMDA.Rd
man/enrichModule.Rd
man/enrichSMPDB.Rd
man/gson_KO.Rd
man/gson_cpd.Rd
man/gson_enzyme.Rd
man/gson_module.Rd
man/microbiota_taxlist.Rd
man/run_MicrobiomeProfiler.Rd
tests/testthat.R
tests/testthat/test_enrichX.R
vignettes/.gitignore
vignettes/MicrobiomeProfiler.Rmd
vignettes/MicrobiomeProfiler.bib
vignettes/screenshot_1.png
vignettes/screenshot_2.png
vignettes/screenshot_3.png
vignettes/screenshot_4.png
vignettes/screenshot_5.png
