Man pages for YuLab-SMU/clusterProfiler
A universal enrichment tool for interpreting omics data
| append_kegg_category | append_kegg_category |
| bitr | bitr |
| bitr_kegg | bitr_kegg |
| browseKEGG | browseKEGG |
| clusterProfiler-package | clusterProfiler: A universal enrichment tool for interpreting... |
| compareCluster | Compare gene clusters functional profile |
| DataSet | Datasets gcSample contains a sample of gene clusters. |
| download_KEGG | download_KEGG |
| dropGO | dropGO |
| enrichDAVID | enrichDAVID |
| enricher | enricher |
| enrichGO | GO Enrichment Analysis of a gene set. Given a vector of... |
| enrichKEGG | KEGG Enrichment Analysis of a gene set. Given a vector of... |
| enrichMKEGG | KEGG Module Enrichment Analysis of a gene set. Given a vector... |
| enrichPC | enrichPC |
| enrichWP | enrichWP |
| getPPI | getPPI |
| getTaxID | getTaxID |
| getTaxInfo | getTaxInfo |
| get_wp_organisms | get_wp_organism |
| Gff2GeneTable | Gff2GeneTable |
| go2ont | go2ont |
| go2term | go2term |
| gofilter | gofilter |
| groupGO | Functional Profile of a gene set at specific GO level. Given... |
| groupGOResult-class | Class "groupGOResult" This class represents the result of... |
| GSEA | GSEA |
| gseGO | gseGO |
| gseKEGG | gseKEGG |
| gseMKEGG | gseMKEGG |
| gsePC | gsePC |
| gseWP | gseWP |
| gson_GO | gson_KEGG |
| gson_KEGG | gson_KEGG |
| gson_KEGG_mapper | Build KEGG annotation for novel species using KEGG Mapper |
| gson_WP | gson_WP |
| idType | idType |
| ko2name | ko2name |
| merge_result | merge_result |
| plotGOgraph | plotGOgraph |
| read.gmt.pc | read.gmt.pc |
| reexports | Objects exported from other packages |
| search_kegg_organism | search_kegg_organism |
| simplify-methods | simplify method |
| uniprot_get | uniprot_get |
