clusterProfiler-package: clusterProfiler: A universal enrichment tool for interpreting...

In YuLab-SMU/clusterProfiler: A universal enrichment tool for interpreting omics data

clusterProfiler: A universal enrichment tool for interpreting omics data

Description

This package supports functional characteristics of both coding and non-coding genomics data for thousands of species with up-to-date gene annotation. It provides a univeral interface for gene functional annotation from a variety of sources and thus can be applied in diverse scenarios. It provides a tidy interface to access, manipulate, and visualize enrichment results to help users achieve efficient data interpretation. Datasets obtained from multiple treatments and time points can be analyzed and compared in a single run, easily revealing functional consensus and differences among distinct conditions.

Author(s)

Maintainer: Guangchuang Yu [e-mail] (ORCID) [copyright holder]

Other contributors:

• Li-Gen Wang [e-mail] [contributor]

• Erqiang Hu [e-mail] [contributor]

• Xiao Luo [e-mail] [contributor]

• Meijun Chen [e-mail] [contributor]

• Giovanni Dall'Olio [e-mail] [contributor]

• Wanqian Wei [e-mail] [contributor]

• Chun-Hui Gao [e-mail] (ORCID) [contributor]

See Also

Useful links:

• https://yulab-smu.top/biomedical-knowledge-mining-book/ (docs)

• \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.xinn.2021.100141 (paper)")}

• Report bugs at https://github.com/GuangchuangYu/clusterProfiler/issues

YuLab-SMU/clusterProfiler documentation built on April 15, 2024, 9:28 p.m.