search_kegg_organism: search_kegg_organism

In YuLab-SMU/clusterProfiler: A universal enrichment tool for interpreting omics data

search_kegg_organism

Description

search kegg organism, listed in https://www.genome.jp/kegg/catalog/org_list.html

Usage

search_kegg_organism(
  str,
  by = "scientific_name",
  ignore.case = FALSE,
  use_internal_data = TRUE
)

Arguments

str	string
by	one of 'kegg.code', 'scientific_name' and 'common_name'
ignore.case	TRUE or FALSE
use_internal_data	logical, use kegg_species.rda or latest online KEGG data

Value

data.frame

Author(s)

Guangchuang Yu

YuLab-SMU/clusterProfiler documentation built on Dec. 3, 2024, 1:32 p.m.