pathway: Pathway
In YulongNiu/BioCyc_API: A package for providing BioCyc databases API in R

Description Usage Arguments Details Value Author(s) Examples

BioCyc Database API - Pathway

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getCycPathway(speID)

getCycGenesfPathway(pathID)

`speID`	The BioCyc species ID, for example "ECOLI" is for "Escherichia coli K-12 substr. MG1655".
`pathID`	Pathway ID.

getCycPathway(): Get whole pathways list.
getCycGenesfPathway(): Get genes from a given pathway ID.

It may take more than 10 minutes to retrieve the xml file.

getCycPathway(): A tbl_df contains 1st column is pathway ID and 2nd column is pathway annotation.
getCycGenesfPathway(): A list indicates genes, proteins, and common names.

Yulong Niu yulong.niu@hotmail.com

## Candida albicans SC5314 pathways
calTU <- getCycPathway('CALBI')

## genes of pathway "CALBI:PWY3B3-8"
genes <- getCycGenesfPathway('CALBI:PWY3B3-8')