getCycPhylo: Get species from BioCyc
In YulongNiu/BioCyc_API: A package for providing BioCyc databases API in R

Description Usage Arguments Details Value Author(s) Examples

BioCyc Database API - Get species information from BioCyc.

1	getCycPhylo(speList, speType = "BioCyc", whole = FALSE, n = 2)

`speList`	A `character vector` contains species list like 'c("HUMAN", "ECOLI", "ZMOB579138")'. It should be consistent with the parameter 'speType'.
`speType`	A `string` "BioCyc" or "regexpr". "BioCyc" means it is the BioCyc species ID, for example "HUMAN" is the BioCyc ID for the Homo sapiens.The "regexpr" is used for regulare expression search with the Latin name for example "Escherichia coli".
`whole`	A `logic` whether or not get the whole BioCyc species list, and the default value is FALSE.
`n`	A `integer` refers to the number of cores.

Get the BioCyc species information including the BioCyc species ID and the Latin name.

A tbl_df object contains BioCycID, Latin name, and version.

Yulong Niu yulong.niu@hotmail.com

## search species list from BioCyc ID
getCycPhylo(c('HUMAN', 'ECOLI', 'ZMOB579138'), speType = 'BioCyc')

## search species whose names include 'Escherichia coli'
getCycPhylo('Escherichia coli', speType = 'regexpr')

## Not run: 
## get whole BioCyc species information table
getCycPhylo(whole = TRUE)
## End(Not run)