Plot_GC_columns: Plot GC content distribution of features by columns.

In ZhenWei10/meripQC: Quality control and inference for m6A-seq datasets.

Description

Plot_Seq_depth is an internal function used to generate a GC content distribution plot given an input SummarizedExperiment object.

Usage

Plot_GC_columns(SE_M, GC_IDX, HDER, ANNOT = F)

Arguments

SE_M	A SummarizedExperiment object with 2 necessary columns in colData: c( "IP_input", "SRR_RUN" ).
GC_IDX	A numeric vector indicate the GC content of each individual feature.
HDER	Determine the content of the title and the file name of the plot saved.
ANNOT	Whether annotate the plot with additional batch or treatment information, in this version, it depends on the column of c("Perturbation_detail") in the colData.

Value

A pdf diagram saved under the current working directory.

ZhenWei10/meripQC documentation built on May 13, 2019, 11:51 p.m.