adonis.pairwise: Pairwise multilevel comparison using adonis

In ZhonghuiGai/veganEx:

Description

Pairwise multilevel comparison using adonis

Usage

adonis.pairwise(
  x,
  factors,
  sim.function = "vegdist",
  sim.method = "bray",
  p.adjust.m = "bonferroni",
  perm = 999
)

Arguments

x	Data frame (the community table), or "dist" object (user-supplied distance matrix).
factors	Vector (a column or vector with the levels to be compared pairwise).
sim.function	Function used to calculate the similarity matrix, one of 'daisy' or 'vegdist' default is 'vegdist'. Ignored if x is a distance matrix.
sim.method	Similarity method from daisy or vegdist, default is 'bray'. Ignored if x is a distance matrix.
p.adjust.m	The p.value correction method, one of the methods supported by p.adjust(), default is 'bonferroni'.
perm	perm

Value

Table with the pairwise factors, R^2, p.value and adjusted p.value.

Author(s)

ZH Gai

Examples

adonis.pairwise(iris[,1:4],iris$Species)

ZhonghuiGai/veganEx documentation built on Dec. 18, 2021, 9:20 p.m.