ggbeta.disp: Multivariate dispersion analysis based on ggplot2 and...

In ZhonghuiGai/veganEx:

Description

Multivariate dispersion analysis based on ggplot2 and betadisper function of vagan package

Usage

ggbeta.disp(data, type = "ordiplot", pc = 12, show.pvalue = TRUE)

Arguments

data	a data frame with the first collounm as the grouping information
type	the type of result to present, one of "boxplot", "ordiplot" or "mod", default value is ordiplot.
pc	which axis to present, one of 12, 13, or 23, the default value is 12.
show.pvalue	a boolean value, the default value is TRUE.

Author(s)

Zhonghui Gai

Examples

genus.Syn <- read.csv(file = "genus.Syn.csv", row.names = 1)
ggbeta.disp(genus.Syn, pc = 12)
library(vegan)
plot(mod, ellipse = T, hull = F, conf = 0.95, axes = c(1,2))
vegan:::plot.betadisper(mod)
vegan:::boxplot.betadisper(mod)
ggbeta.disp(genus.Syn, pc = 12, type = "boxplot")
ggbeta.disp(genus.Syn, pc = 12, type = "mod")

ZhonghuiGai/veganEx documentation built on Dec. 18, 2021, 9:20 p.m.