plotExp.cfa2way: Diagnostic plot of experimental replicates for two-way...
In ZytoHMGU/CFAssay: Statistical analysis for the Colony Formation Assay

Description Usage Arguments Author(s) See Also Examples

This function plots the estimated means of a two-way ANOVA for each experiment in a series of plots. It is recommended to direct it in a pdf-file.

1 2	## S3 method for class 'cfa2way' plotExp(x, labels=c(A="A",B="B"), ...)

`x`	an R object of class `cfa2way` and resulting from function `cfa2way`.
`labels`	Labels for output description. These describe the meaning of `A` and of `B`.
`...`	further arguments to pass to generic function `plotExp`.

Herbert Braselmann

cfa2way

datatab<- read.table(system.file("doc", "exp2_2waycfa.txt", package="CFAssay"), header=TRUE, sep="\t")
names(datatab)  # has columns "x5fuCis" and "siRNA" 
fitcomp<- cfa2way(datatab, A="siRNA", B="x5fuCis", param="A/B")
print(fitcomp, labels=c(A="siRNA",B="x5fuCis"))
  pdf("TwoWay_experimental_plots.pdf")
    plotExp(fitcomp, labels=c(A="siRNA", B="x5fuCis"))
  dev.off()