Description Usage Arguments Details Author(s) Examples
The result of scan_hetset
run is visualized.
Histogram, scatterplot or matrix of scatterplots of pairwise selected features
are chosen according to the number of the selected features.
1 | plot_hetset(H, plot_in = "no_file", file_name = "hetset_plot_temp")
|
H |
|
plot_in |
Argument indicating an output device other than monitor.
Possible obptions are |
file_name |
If the figure is plotted to a file, this |
The set of selected features as returned by scan_hetset
is
visualized in a histogram, scatterplot or array of scatterplots according to
the number of selected features (of 1, 2 or more than 2 respectively). If more
than 10 features have been selected, the set is printed to console.
The samples are colored with respect to the partitioning indicated in sample data prt
.
Other coloring can be set by the color_type
metadata field of the data container.
raw
sets all sample color to gray, when indiv
is set to a column name of the sample data in H
,
the samples are colore according to the corresponding entry in the sample data.
Daniel Samaga
1 2 3 4 5 6 7 8 9 10 11 12 13 | data("TCGA_HNSCC_expr")
Hds <- censor_data(H)
Hds1 <- scan_hetset(H = Hds,min_size = 1,max_size = 1)
plot_hetset(Hds1)
Hds2 <- scan_hetset(H = Hds,min_size = 2,max_size = 2)
plot_hetset(Hds2)
Hds3 <- scan_hetset(H = Hds,min_size = 3,max_size = 3)
plot_hetset(Hds3)
Hds <- scan_hetset(H = Hds3,min_size = 3,max_size = 6)
plot_hetset(Hds)
|
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