censor_data: Censor Outliers in Assay

In ZytoHMGU/hetset: Identification of Heterogeneous Subsets in Data

Description

All features in the first assay of an SummarizedExperiment container are interval-censored to k-fold standard deviation around the mean.

Usage

censor_data(H, k = 4)

Arguments

H	A SummarizedExperiment data container
k	number of standard deviations around the mean. (default: k = 4)

Details

The data of the first assay in a SummarizedExperiment container is censored featurewise as described in censor_feature.

Value

The data container with censored values in the first assay is returned.

Author(s)

Daniel Samaga

Examples

A <- matrix(data = rnorm(n = 150,mean = 1,sd = 1),ncol = 50)
A <- cbind(A,rpois(3,10))
Hds <- hetset(A)
plot_hetset(Hds)
Hds <- censor_data(Hds)
plot_hetset(Hds)

ZytoHMGU/hetset documentation built on June 6, 2019, 2:16 p.m.