Man pages for a-parton/CTStepTurn
Fitting the continuous-time step-and-turn movement model

calc_cond_step_distOU Conditional distribution.
calc_dist_OU_backwardCalculate reverse-time OU distribution.
calc_dist_OU_bridgeCalculate OU bridge distribution.
calc_dist_OU_forwardCalculate OU distribution.
calc_dist_step_backwardStep distribution of a path section (correlated steps, start...
calc_dist_step_bridgeStep distribution of a path section (correlated steps, middle...
calc_dist_step_forwardStep distribution of a path section (correlated steps, end...
calc_dist_true_locs_backwardCalculate distribution of fixed locations (but in reverse...
calc_dist_true_locs_forwardCalculate distribution of fixed locations.
calc_error_likCalculate observation error (correlated) likelihood
calc_markov_post_paramConditional posterior distribution of Markov chain.
calc_markov_steady_stateMarkov chain equilibrium distribution.
calc_markov_suff_statsCalculate Markov chain sufficient statistics.
calc_reverse_markov_genCalculate the generator matrix of a Markov chain in reverse...
calc_step_distStep distribution of a path section (independent steps).
calc_step_likStep likelihood.
check_valid_markovCheck Markov chain is valid.
create_behav_proc_from_refinedCreate behavioural switch times and states.
create_refined_behavsCreate refined behaviours.
create_refined_timesCreate refined time scale.
draw_random_path_sectionDraw a random path section.
Gibbs_update_obs_error_paramSimulate observation error (independent) parameter.
MH_update_obs_error_paramSimulate observation error (correlated) parameters.
set_current_valuesIdentify current values relating to a chosen path section.
set_fixed_valuesIdentify fixed values relating to a chosen path section.
sim_brownian_backwardSimulate reverse-time Brownian motion.
sim_brownian_bridgeSimulate Brownian bridge.
sim_brownian_forwardSimulate Brownian motion.
sim_markov_backwardSimulate Markov chain backwards in time.
sim_markov_bridgeSimulate Markov chain bridge.
sim_markov_forwardSimulate Markov chain.
sim_stepsSimulate conditional steps.
update_bearing_paramSimulate bearing parameters.
update_behav_paramSimulate behaviour parameters.
update_refined_pathUpdate a given section of the refined path.
update_speed_paramSimulate speed parameters.
a-parton/CTStepTurn documentation built on Dec. 20, 2017, 4:55 a.m.