a-thind/PathAnalyser: ER & HER2 Pathway Activity Analysis For Breast Cancer Transcriptomic Datasets
PathAnalyser provides an assessment of molecular pathway activity in transcriptomic datasets. The classification algorithm employed by PathAnalyser implements Gene GSVA to classify samples in a transcriptomic dataset by pathway activity using a gene signature. Currently, the package provides built-in data for assessment of ER & HER2 pathway activity in breast cancer transcriptomic datasets, however the PathAnalyser functionality could also be applied to gene signatures and/or transcriptomic datasets in non-oncological contexts.
Getting started
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Package details |
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| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.0.0 |
| URL | https://github.com/ozlemkaradeniz/PathAnalyser |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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