HER2_TCGA_RNAseq: HER2 RNA-seq gene expression data set from TCGA

In a-thind/PathAnalyser: ER & HER2 Pathway Activity Analysis For Breast Cancer Transcriptomic Datasets

HER2 RNA-seq gene expression data set from TCGA

Description

A gene expression matrix containing RNA-seq raw read counts for 60 primary human breast tumour samples (30 human epidermal growth receptor (HER2) positive and 30 HER2 negative samples were selected at random). This data set is a subset of a much larger data set containing 1,101 primary breast tumour samples collected from The Cancer Genome Atlas (TCGA).

Usage

HER2_TCGA_RNAseq

Format

A matrix containing 20,124 HUGO gene symbols (row names) and 60 breast cancer tumour samples IDs (columns) given in the form of TCGA barcodes for each sample. For further information on TCGA bar code semantics, please see the NIH GDC documentation https://docs.gdc.cancer.gov/Encyclopedia/pages/TCGA_Barcode/.

Source

TCGA https://portal.gdc.cancer.gov).

a-thind/PathAnalyser documentation built on May 6, 2022, 9:50 a.m.