pantherGraphic-methods: Query PsyGeNET for given genes and creates a representation...
In aGutierrezSacristan/psygenet2r: psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
pantherGraphic R Documentation
Query PsyGeNET for given genes and creates a representation in base of
their panther-class
Description
Given a vector of genes of interest (or using a DataGeNET.Psy object), this
function creates a representation of a the panther-class these genes belongs
to.
Usage
pantherGraphic(x, database = "ALL", evidenceIndex, verbose = FALSE)
Arguments
x
Vector of genes of interest of DataGeNET.Psy resulting of
psyegnetDisease.
database
Name of the database that will be queried. It can take the
values 'psycur15' to use data validated by experts for first release
of PsyGeNET; 'psycur16' to use data validated by experts for second
release of PsyGeNET; or 'ALL' to use both databases.
Default 'ALL'.
evidenceIndex
threshold to take into account a gene in the analysis
verbose
By default FALSE. Change it to TRUE to get a
on-time log from the function.
Value
A plot for a DataGeNET.Psy in terms of the panther-class.
Examples
d.alch <- pantherGraphic( c( "COMT", "CLOCK", "DRD3" ), "ALL" )
aGutierrezSacristan/psygenet2r documentation built on Jan. 18, 2024, 4:06 a.m.
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| pantherGraphic | R Documentation |
Query PsyGeNET for given genes and creates a representation in base of their panther-class
Description
Given a vector of genes of interest (or using a DataGeNET.Psy object), this function creates a representation of a the panther-class these genes belongs to.
Usage
pantherGraphic(x, database = "ALL", evidenceIndex, verbose = FALSE)
Arguments
x |
Vector of genes of interest of |
database |
Name of the database that will be queried. It can take the
values |
evidenceIndex |
threshold to take into account a gene in the analysis |
verbose |
By default |
Value
A plot for a DataGeNET.Psy in terms of the panther-class.
Examples
d.alch <- pantherGraphic( c( "COMT", "CLOCK", "DRD3" ), "ALL" )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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