visualizeArea: Visualize significant time interval

In aametwally/OmicsLonDA: Omics Longitudinal Differential Analysis

Description

Visualize significant time interval

Usage

visualizeArea(omicslonda_object = NULL, fit.method = "ssgaussian",
  text = "FeatureName", unit = "days", ylabel = "Normalized Count",
  col = c("blue", "firebrick"), prefix = "Test")

Arguments

omicslonda_object	The returned object from omicslonda analysis
fit.method	Fitting method (ssgaussian)
text	Feature name
unit	time unit used in the Time vector (hours, days, weeks, months, etc.)
ylabel	text to be shown on the y-axis of all generated figures (default: "Normalized Count")
col	two color to be used for the two groups (eg., c("red", "blue")).
prefix	prefix to be used to create directory for the analysis results

Value

null

References

Ahmed Metwally ([e-mail])

Examples

library(SummarizedExperiment)
data(omicslonda_data_example)
visualizeArea(omicslonda_object = omicslonda_data_example$omicslonda_results, 
                 fit.method = "ssgaussian",
                 text = "Feature_1", unit = "days", 
                 ylabel = "Normalized Count", col =
                 c("blue", "firebrick"), prefix = tempfile())

aametwally/OmicsLonDA documentation built on Feb. 10, 2020, 11:47 a.m.