visualizeFeature: Visualize Longitudinal Feature

In aametwally/OmicsLonDA: Omics Longitudinal Differential Analysis

Description

Visualize Longitudinal Feature

Usage

visualizeFeature(se_object = NULL, text = "featureName",
  unit = "days", ylabel = "Normalized Count", col = c("blue",
  "firebrick"), prefix = "Test")

Arguments

se_object	SummarizedExperiment object contains omics count/level matrix and metadata
text	feature name
unit	time interval unit
ylabel	text to be shown on the y-axis of all generated figures (default: "Normalized Count")
col	two color to be used for the two groups (eg., c("red", "blue")).
prefix	prefix to be used to create directory for the analysis results

Value

null

References

Ahmed Metwally ([e-mail])

Examples

library(SummarizedExperiment)
data("omicslonda_data_example")
omicslonda_se_object_adjusted = adjustBaseline(
                 se_object = omicslonda_data_example$omicslonda_se_object)
omicslonda_test_object = omicslonda_se_object_adjusted[1,]
visualizeFeature(se_object = omicslonda_test_object, text = "Feature_1",
                 unit = "days", ylabel = "Normalized Count", 
                 col = c("blue", "firebrick"), prefix = tempfile())

aametwally/OmicsLonDA documentation built on Feb. 10, 2020, 11:47 a.m.