NEWS.md

In aaronwolen/dmGWAS2: A fork of EW_dmGWAS

dmGWAS2 0.0.1

New features

• Dense module searches and permutations are performed when a parallel backend is registered with the foreach package
• Documentation has been migrated to roxygen
• Added Travis CI

Minor improvements

• find_best_node has been externalized and simplified
• new deduplicate function to remove redundant gene-sets
• multiple calculate_score() definitions have been consolidated
• added testing infrastructure

Changes

• Removed dms_2.4() (the functionality may be re-added later)

• dms() no longer auto-exports an Rdata file

• The list of results returned by dmGWAS2::dms() differs from dmGWAS::dms():

  • genesets.length.null.stat is excluded since the mean and SD for each set of permuted scores can easily be calculated

  • ordered.module.score.matrix is excluded since it can easily be recreated

  • module.score.matrix gains a new column n, which gives the number of vertices in each module

  • the genesets.clear slot has been renamed to genesets

aaronwolen/dmGWAS2 documentation built on May 10, 2019, 4:04 a.m.