getBarcodeData: Get data for barcode and violin plots

In abbvie-external/OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization

Get data for barcode and violin plots

Description

Get data for barcode and violin plots

Usage

getBarcodeData(study, modelID, testID, annotationID, termID)

Arguments

study	An OmicNavigator study. Either an object of class onStudy, or the name of an installed study package.
modelID	Filter by modelID
testID	Filter by testID
annotationID	Filter by annotationID
termID	Filter by termID

Value

A list with the following components:

data	Data frame with the differential statistics to plot
highest	(numeric) The largest differential statistic, rounded up to the next integer
lowest	(numeric) The lowest differential statistic, rounded down to the next integer
labelStat	(character) The x-axis label to describe the differential statistic
labelLow	(character) The vertical axis label on the left to describe smaller values (default is "Low")
labelHigh	(character) The vertical axis label on the right to describe larger values (default is "High")

See Also

addBarcodes, getBarcodes

abbvie-external/OmicNavigator documentation built on April 12, 2025, 12:07 a.m.