getEnrichmentsTable: Get enrichments table from a study

In abbvie-external/OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization

Get enrichments table from a study

Description

Get enrichments table from a study

Usage

getEnrichmentsTable(
  study,
  modelID,
  annotationID,
  type = "nominal",
  libraries = NULL
)

Arguments

study	An OmicNavigator study. Either an object of class onStudy, or the name of an installed study package.
modelID	Filter by modelID
annotationID	Filter by annotationID
type	Type of p-value: ("nominal" or "adjusted")
libraries	The directories to search for installed study packages. If left as NULL (the default), then installed.packages will use the result of .libPaths.

Value

A data frame of enrichments with the following columns:

termID	The unique ID for the annotation term
description	The description of the annotation term
...	One column for each of the enrichments

abbvie-external/OmicNavigator documentation built on April 12, 2025, 12:07 a.m.