getEnrichmentsIntersection: getEnrichmentsIntersection

In abbvie-external/OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization

getEnrichmentsIntersection

Description

getEnrichmentsIntersection

Usage

getEnrichmentsIntersection(
  study,
  modelID,
  annotationID,
  mustTests,
  notTests,
  sigValue,
  operator,
  type
)

Arguments

study	An OmicNavigator study. Either an object of class onStudy, or the name of an installed study package.
modelID	Filter by modelID
annotationID	Filter by annotationID
mustTests	The testIDs for which a featureID (or termID for enrichment) must pass the filters
notTests	The testIDs for which a featureID (or termID for enrichment) must not pass the filters. In other words, if a featureID passes the filter for a testID specified in notTests, that featureID is removed from the output
sigValue	The numeric significance value to use as a cutoff for each column
operator	The comparison operators for each column, e.g. "<"
type	Type of p-value: ("nominal" or "adjusted")

Value

Returns a data frame with the enrichments, similar to getEnrichmentsTable. Only rows that pass all the filters are included.

See Also

getEnrichmentsTable

abbvie-external/OmicNavigator documentation built on April 12, 2025, 12:07 a.m.