kernalOverlapBA_p: Calculate Bhattacharyya's affinity for two groups of animal...
In abfleishman/trakR: Basic Animal Tracking Data Analysis Tools

kernalOverlapBA_p

R Documentation

Calculate Bhattacharyya's affinity for two groups of animal tracks

Description

This function calculated Bhattacharyya's affinity for two groups of animal tracks. This could be Two sexes, high/low contaiminants loads, high low stress. You must have a tripID column that is unique to the trip, not just trip within bird. This can be created by paste(birdID, tripID,sep="_) if you do not already have this column.

Usage

kernalOverlapBA_p(
  tracks,
  tripid = "tripID",
  groupid = "Sex",
  lon = "Longitude",
  lat = "Latitude",
  colonyLon = -113.244555,
  colonyLat = 31.015513,
  its = 10,
  h = 1.4809524,
  ud.grid,
  Plot = F
)

Arguments

`tracks`	a data frame with tracking data
`tripid`	quoted column name housing unique trip ID. This can be created by paste(birdID, tripID,sep="_) if it does not already exist. trakR::MakeTrip can partition trips if not already done
`groupid`	quoted column name housing latitude
`lon`	quoted column name housing latitude
`lat`	quoted column name housing latitude
`colonyLon`	central longitude of the colony or center of the tracking data for reprojecting that lon/lat data into Lambert Azmuthel Equal Area in km
`colonyLat`	central latitude of the colony or center of the tracking data for reprojecting that lon/lat data into Lambert Azmuthel Equal Area in km
`its`	number of iterations
`h`	the smoothing parameter for kernelUD
`ud.grid`	a "SpatialPixelsDataFrame" generated with an extent and cell size with the function adehabitatMA::ascgen()
`Plot`	TRUE/FALSE if each randomization should be plotted?