enumerateI: Enumerate identity vectors

Description Usage Arguments Value Author(s) Examples

View source: R/enumerateI-function.R

Description

Enumerates all identity vectors associated with the k putative replicates of a given proband

Usage

1

Arguments

k

(numeric integer) specifies the number of putative replicates associated with the proband in question.

Value

The function returns a named list enumerating all of the identity vectors that describe how the k putative replicates could potentially be related to one another.

Author(s)

Ariel W Chan, [email protected]

Examples

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k3 <- enumerateI(k=3)
This function call returns a named list consisting of three elements, which are also themselves
lists: 's=1', 's=2', and 's=3'.

Printing the output of enumerateI(k=3)[['s=2']] allows us to see the identity vectors that describe the case
where the k=3 supposed replicates actually originated from s=2 genotypic sources:
$`120`
[,1] [,2] [,3]
[1,]    1    2    2     # corresponds to the identity vector I=1,2,2, where samples d=2 and d=3 originate from one genotype source and d=1 is assumed to be the outlier
$`210`
[,1] [,2] [,3]
[1,]    1    1    2     # corresponds to the identity vector I=1,1,2, where samples d=1 and d=2 originate from one genotype source and d=3 is assumed to be the outlier
[2,]    1    2    1     # corresponds to the identity vector I=1,2,1, where samples d=1 and d=3 originate from one genotype source and d=2 is assumed to be the outlier

ac2278/BIGRED documentation built on Aug. 14, 2018, 5:23 a.m.