enumerateS: Enumerate source vectors

In ac2278/BIGRED: Bayes Inferred Genotype Replicate Error Detector (BIGRED)

Description

Enumerates all source vectors associated with the k putative replicates of a given proband

Usage

enumerateS(k)

Arguments

k	(numeric integer) specifies the number of putative replicates associated with the proband in question.

Value

The function returns a named list enumerating all of the source vectors that describe how the k putative replicates could potentially be related to one another.

Author(s)

Ariel W Chan, [e-mail]

Examples

k3 <- enumerateS(k=3)
This function call returns a named list consisting of three elements, which are also themselves
lists: 'i=1', 'i=2', and 'i=3'.

Printing the output of enumerateS(k=3)[['i=2']] allows us to see the source vectors that describe the case
where the k=3 supposed replicates actually originated from i=2 genotypic sources:
$`120`
[,1] [,2] [,3]
[1,]    1    2    2     # corresponds to the source vector S=1,2,2, where samples d=2 and d=3 originate from one genotype source and d=1 is assumed to be the outlier
$`210`
[,1] [,2] [,3]
[1,]    1    1    2     # corresponds to the source vector S=1,1,2, where samples d=1 and d=2 originate from one genotype source and d=3 is assumed to be the outlier
[2,]    1    2    1     # corresponds to the source vector S=1,2,1, where samples d=1 and d=3 originate from one genotype source and d=2 is assumed to be the outlier

ac2278/BIGRED documentation built on May 28, 2019, 3:22 p.m.