Description Usage Arguments Value Author(s) Examples

View source: R/enumerateS-function.R

Enumerates all source vectors associated with the k putative replicates of a given proband

1 | ```
enumerateS(k)
``` |

`k` |
(numeric integer) specifies the number of putative replicates associated with the proband in question. |

The function returns a named list enumerating all of the source vectors that describe how the k putative replicates could potentially be related to one another.

Ariel W Chan, [email protected]

1 2 3 4 5 6 7 8 9 10 11 12 13 | ```
k3 <- enumerateS(k=3)
This function call returns a named list consisting of three elements, which are also themselves
lists: 'i=1', 'i=2', and 'i=3'.
Printing the output of enumerateS(k=3)[['i=2']] allows us to see the source vectors that describe the case
where the k=3 supposed replicates actually originated from i=2 genotypic sources:
$`120`
[,1] [,2] [,3]
[1,] 1 2 2 # corresponds to the source vector S=1,2,2, where samples d=2 and d=3 originate from one genotype source and d=1 is assumed to be the outlier
$`210`
[,1] [,2] [,3]
[1,] 1 1 2 # corresponds to the source vector S=1,1,2, where samples d=1 and d=2 originate from one genotype source and d=3 is assumed to be the outlier
[2,] 1 2 1 # corresponds to the source vector S=1,2,1, where samples d=1 and d=3 originate from one genotype source and d=2 is assumed to be the outlier
``` |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.