API for acidgenomics/AcidBase
Acid Genomics Base Functions
| Global functions | |
|---|---|
| .abort | Source code |
| .alert | Source code |
| .alertWarning | Source code |
| .captureGroups | Source code |
| .extractLocal | Source code |
| .hasLocal | Source code |
| .isLocalCall | Source code |
| .normalizePath | Source code |
| .rank | Source code |
| .strSplitFinite | Source code |
| .strSplitInfinite | Source code |
| .toInlineString | Source code |
| AcidBase | Man page |
| AcidBase-package | Man page |
| addToPathEnd | Man page Source code |
| addToPathStart | Man page Source code |
| appendToBody | Man page Source code |
| barcodePattern | Man page |
| basenameSansExt | Man page Source code |
| classContains | Man page Source code |
| coerceToList | Man page |
| coerceToList,Annotated-method | Man page |
| collapseToPathString | Man page Source code |
| compress | Man page Source code |
| cpus | Man page Source code |
| decompress | Man page Source code |
| dots | Man page Source code |
| download | Man page Source code |
| dupes | Man page Source code |
| euclidean | Man page |
| euclidean,numeric-method | Man page |
| fileDepth | Man page Source code |
| fileExt | Man page Source code |
| foldChangeToLogRatio | Man page |
| foldChangeToLogRatio,numeric-method | Man page |
| genomeMetadataNames | Man page |
| geometricMean | Man page |
| geometricMean,AsIs-method | Man page |
| geometricMean,matrix-method | Man page |
| geometricMean,numeric-method | Man page |
| gitBranch | Man page |
| gitCurrentBranch | Man page Source code |
| gitDefaultBranch | Man page Source code |
| headtail | Man page |
| headtail,data.frame-method | Man page |
| headtail,list-method | Man page |
| headtail,matrix-method | Man page |
| headtail,vector-method | Man page |
| initDir | Man page Source code |
| intersectAll | Man page |
| intersectAll,list-method | Man page |
| intersectionMatrix | Man page |
| intersectionMatrix,DFrame-method | Man page |
| intersectionMatrix,data.frame-method | Man page |
| intersectionMatrix,list-method | Man page |
| intersectionMatrix,matrix-method | Man page |
| keepOnlyAtomicCols | Man page |
| keepOnlyAtomicCols,DFrame-method | Man page |
| keepOnlyAtomicCols,data.frame-method | Man page |
| lanePattern | Man page |
| logRatio | Man page |
| logRatioToFoldChange | Man page |
| logRatioToFoldChange,numeric-method | Man page |
| majorMinorVersion | Man page Source code |
| majorVersion | Man page Source code |
| matchAll | Man page |
| matchAll,character,character-method | Man page |
| matchAll,factor,factor-method | Man page |
| matchAll,numeric,numeric-method | Man page |
| matchNested | Man page |
| matchNested,character,DFrame-method | Man page |
| matchNested,character,data.frame-method | Man page |
| matchNested,character,list-method | Man page |
| metadataDenylist | Man page |
| methodDefinition | Man page |
| methodFormals | Man page Source code |
| methodFunction | Man page Source code |
| metricsCols | Man page |
| minorVersion | Man page Source code |
| missingOrNULL-class | Man page |
| modifyPathString | Man page |
| notDupes | Man page Source code |
| params | Man page |
| parentDir | Man page |
| parentDirectory | Man page Source code |
| pasteUrl | Man page Source code |
| pkgCacheDir | Man page Source code |
| printString | Man page Source code |
| quietly | Man page |
| ram | Man page Source code |
| randomString | Man page Source code |
| rankedMatrix | Man page |
| rankedMatrix,matrix-method | Man page |
| realpath | Man page Source code |
| reexports | Man page |
| removeFromPath | Man page Source code |
| sanitizeVersion | Man page Source code |
| sem | Man page |
| sem,AsIs-method | Man page |
| sem,numeric-method | Man page |
| shell | Man page Source code |
| showHeader | Man page |
| showHeader,ANY-method | Man page |
| showHeader,Annotated-method | Man page |
| showSlotInfo | Man page Source code |
| simpleClass | Man page Source code |
| splitPathString | Man page Source code |
| standardizeCall | Man page Source code |
| strExtract | Man page Source code |
| strExtractAll | Man page Source code |
| strMatch | Man page Source code |
| strMatchAll | Man page Source code |
| strPad | Man page Source code |
| strRemoveEmpty | Man page Source code |
| strReplaceNa | Man page Source code |
| strSplit | Man page Source code |
| tempdir2 | Man page Source code |
| truncateString | Man page Source code |
| uniquePathString | Man page Source code |
| unlink2 | Man page Source code |
| updateMessage | Man page |
| zscore | Man page |
| zscore,matrix-method | Man page |
| zscore,numeric-method | Man page |
