AcidBase-package | AcidBase |
appendToBody | Append values to function body |
barcodePattern | Single-sell barcode pattern |
basenameSansExt | Base name without the file extension |
classContains | Get the class contained in a specificed class definition |
coerceToList | Coerce to list |
collapseToPathString | Collapse the input to a 'PATH' string. |
compress | Compress or decompress a file |
defunct | Defunct functions |
dots | Extract dots from function |
download | Download a file from the Internet |
euclidean | Calculate Euclidean distance |
fileDepth | File depth |
fileExt | File extension |
forceDetach | Force detach packages |
genomeMetadataNames | Slot names in metadata containing genome information |
geometricMean | Geometric mean |
gitBranch | Git branch strings |
headtail | Return the first and last parts of an object |
initDir | Initialize directory |
intersectAll | Intersection of more than two vectors |
intersectionMatrix | Intersection matrix |
lanePattern | Sequencing lane grep pattern |
logRatio | Interconvert log ratio and fold change values |
majorVersion | Major version |
metadataDenylist | Sample metadata denylist |
methodDefinition | Access the data inside an S4 method definition |
metricsCols | Quality control metric columns |
minorVersion | Minor version |
missingOrNULL-class | Missing or NULL class union |
modifyPathString | System path string handlers |
params | Shared parameter documentation |
parentDirectory | Parent directory recursion |
pasteURL | Concatenate strings to form a URL |
printString | Print string |
rankedMatrix | Calculate a ranked matrix |
realpath | Express file paths in canonical form |
requireNamespaces | Require package namespaces |
sanitizeVersion | Sanitize version |
sem | Standard error of the mean |
shell | Invoke a command in the system command-line shell |
showHeader | Header for object show method |
showSlotInfo | Show slot information |
simpleClass | Simple class of object |
splitPathString | Split path string environment variable |
standardizeCall | Standardize call |
tempdir2 | Unique temporary directory |
truncateString | Truncate a string with ellipsis, if necessary |
uniquePathString | Unique path string |
unlink2 | Delete files and directories |
updateMessage | Update message |
zscore | Calculate Z-score |
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