README.md

In acidgenomics/AcidBase: Acid Genomics Base Functions

AcidBase

Low-level base functions imported by Acid Genomics packages.

Installation

This is an R package.

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}
install.packages(
    pkgs = "AcidBase",
    repos = c(
        "https://r.acidgenomics.com",
        BiocManager::repositories()
    ),
    dependencies = TRUE
)

Conda method

Configure Conda to use the Bioconda channels.

# Don't install recipe into base environment.
name='r-acidbase'
conda create --name="$name" "$name"
conda activate "$name"
R

Docker method

image='acidgenomics/r-packages:acidbase'
workdir='/mnt/work'
docker pull "$image"
docker run -it \
    --volume="${PWD}:${workdir}" \
    --workdir="$workdir" \
    "$image"

acidgenomics/AcidBase documentation built on Nov. 29, 2022, 7:39 a.m.