Low-level base functions imported by Acid Genomics packages.
This is an R package.
if (!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
install.packages(
pkgs = "AcidBase",
repos = c(
"https://r.acidgenomics.com",
BiocManager::repositories()
),
dependencies = TRUE
)
Configure Conda to use the Bioconda channels.
# Don't install recipe into base environment.
name='r-acidbase'
conda create --name="$name" "$name"
conda activate "$name"
R
image='acidgenomics/r-packages:acidbase'
workdir='/mnt/work'
docker pull "$image"
docker run -it \
--volume="${PWD}:${workdir}" \
--workdir="$workdir" \
"$image"
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