R/AllGenerics.R

In acidgenomics/AcidPlots: Acid Genomics Plot Functions and Themes

#' @export
#' @name plotBarcodeRanks
#' @rdname plotBarcodeRanks
#' @usage plotBarcodeRanks(object, ...)
NULL

#' @export
#' @name plotCellCounts
#' @rdname plotCellCounts
#' @usage plotCellCounts(object, ...)
NULL

#' @export
#' @name plotCellCountsPerCluster
#' @rdname plotCellCountsPerCluster
#' @usage plotCellCountsPerCluster(object, ...)
NULL

#' @export
#' @name plotCellTypesPerCluster
#' @rdname plotCellTypesPerCluster
#' @usage plotCellTypesPerCluster(object, markers, ...)
NULL

#' @export
#' @name plotCorrelation
#' @rdname plotCorrelation
#' @usage plotCorrelation(object, ...)
NULL

#' @export
#' @name plotCorrelationHeatmap
#' @rdname plotCorrelationHeatmap
#' @usage plotCorrelationHeatmap(object, ...)
NULL

#' @export
#' @name plotCounts
#' @rdname plotCounts
#' @usage plotCounts(object, ...)
NULL

#' @export
#' @name plotCountsCorrelation
#' @rdname plotCountsCorrelation
#' @usage plotCountsCorrelation(x, y, ...)
NULL

#' @export
#' @name plotCountsCorrelationHeatmap
#' @rdname plotCountsCorrelationHeatmap
#' @usage plotCountsCorrelationHeatmap(x, y, ...)
NULL

#' @export
#' @name plotCountsPerBiotype
#' @rdname plotCountsPerBiotype
#' @usage plotCountsPerBiotype(object, ...)
NULL

#' @export
#' @name plotCountsPerBroadClass
#' @rdname plotCountsPerBiotype
#' @usage plotCountsPerBroadClass(object, ...)
NULL

#' @export
#' @name plotCountsPerCell
#' @rdname plotCountsPerCell
#' @usage plotCountsPerCell(object, ...)
NULL

#' @export
#' @name plotCountsPerFeature
#' @rdname plotCountsPerFeature
#' @usage plotCountsPerFeature(object, ...)
NULL

#' @export
#' @name plotCountsVsFeatures
#' @rdname plotCountsVsFeatures
#' @usage plotCountsVsFeatures(object, ...)
NULL

#' @export
#' @name plotDots
#' @rdname plotCounts
#' @usage plotDots(object, ...)
NULL

#' @export
#' @name plotFeature
#' @rdname plotFeature
#' @usage plotFeature(object, ...)
NULL

#' @export
#' @name plotFeaturesDetected
#' @rdname plotFeaturesDetected
#' @usage plotFeaturesDetected
NULL

#' @export
#' @name plotFeaturesPerCell
#' @rdname plotFeaturesPerCell
#' @usage plotFeaturesPerCell(object, ...)
NULL

#' @export
#' @name plotGenderMarkers
#' @rdname plotGenderMarkers
#' @usage plotGenderMarkers(object, ...)
NULL

#' @export
#' @name plotHeatmap
#' @rdname plotHeatmap
#' @usage plotHeatmap(object, ...)
NULL

#' @export
#' @name plotKnownMarkers
#' @rdname plotKnownMarkers
#' @usage plotKnownMarkers(object, markers, ...)
NULL

#' @export
#' @name plotMarker
#' @rdname plotMarker
#' @usage plotMarker(object, ...)
NULL

#' @export
#' @name plotMitoRatio
#' @rdname plotMitoRatio
#' @usage plotMitoRatio(object, ...)
NULL

#' @export
#' @name plotNovelty
#' @rdname plotNovelty
#' @usage plotNovelty(object, ...)
NULL

#' @export
#' @name plotPca
#' @rdname plotReducedDim
#' @usage plotPca(object, ...)
NULL

#' @export
#' @name plotQc
#' @rdname plotQc
#' @usage plotQc(object, ...)
NULL

#' @export
#' @name plotQuantileHeatmap
#' @rdname plotQuantileHeatmap
#' @usage plotQuantileHeatmap(object, ...)
NULL

#' @export
#' @name plotReducedDim
#' @rdname plotReducedDim
#' @usage plotReducedDim(object, ...)
NULL

#' @export
#' @name plotStackedBarPlot
#' @rdname plotStackedBarPlot
#' @usage plotStackedBarPlot(object, ...)
NULL

#' @export
#' @name plotSums
#' @rdname plotSums
#' @usage plotSums(object, ...)
NULL

#' @export
#' @name plotTsne
#' @rdname plotReducedDim
#' @usage plotTsne(object, ...)
NULL

#' @export
#' @name plotTotalCounts
#' @rdname plotTotalCounts
#' @usage plotTotalCounts(object, ...)
NULL

#' @export
#' @name plotUmap
#' @rdname plotReducedDim
#' @usage plotUmap(object, ...)
NULL

#' @export
#' @name plotUpset
#' @rdname plotUpset
#' @usage plotUpset(object, ...)
NULL

#' @export
#' @name plotViolin
#' @rdname plotCounts
#' @usage plotViolin(object, ...)
NULL

#' @export
#' @name plotWaterfall
#' @rdname plotWaterfall
#' @usage plotWaterfall(object, ...)
NULL

#' @export
#' @name plotZerosVsDepth
#' @rdname plotZerosVsDepth
#' @usage plotZerosVsDepth(object, ...)
NULL