excludeContaminatedCells: Exclude contaminated cells

In acidgenomics/Cellosaurus: Cellosaurus

Exclude contaminated cells

Description

Exclude contaminated cells

Usage

excludeContaminatedCells(object, ...)

## S4 method for signature 'Cellosaurus'
excludeContaminatedCells(object)

Arguments

object	Object.
...	Additional arguments.

Details

excludeContaminatedCells only filters based on "Problematic cell line: Contaminated" metadata in cell line comments. This is less stringent than excludeProblematicCells and intentionaly keeps cell lines that are misidentified but not contaminated.

Value

Modified object, with contaminated cells excluded (removed).

Note

Updated 2023-09-12.

See Also

• Cellosaurus package.

Examples

data(cello)

## Cellosaurus ====
object <- cello
print(dim(object))
object <- excludeContaminatedCells(object)
print(dim(object))

acidgenomics/Cellosaurus documentation built on March 15, 2024, 1:28 a.m.