mapCells: Map input to cell identifiers

In acidgenomics/Cellosaurus: Cellosaurus

Map input to cell identifiers

Description

Map input to cell identifiers

Usage

mapCells(object, ...)

## S4 method for signature 'Cellosaurus'
mapCells(
  object,
  cells,
  keyType = c("cellosaurusId", "depmapId", "sangerModelId", "atccId", "cellLineName"),
  strict = FALSE
)

Arguments

object	character. Cell names (or Cellosaurus accession identifiers).
cells	character. Cell identifiers.
keyType	character(1). Identifier format to return.
strict	logical(1). FALSE, return NA for cell lines that fail to map. TRUE: Error on mapping failure.
...	Additional arguments.

Details

This function is designed to take input from a spreadsheet, electronic laboratory notebook entry, or cell line provider, where the cell line names may be inconsistent.

If you notice any mapping errors, please file a bug report.

Value

Named character. User input in the names and Cellosaurus accession identifiers in the values.

Note

Updated 2023-09-22.

See Also

• Matching values in list.

Examples

data(cello)

## Cellosaurus ====
object <- cello
cells <- head(cello[["cellLineName"]])
print(cells)
cells <- mapCells(object = object, cells = cells)
print(cells)

acidgenomics/Cellosaurus documentation built on March 15, 2024, 1:28 a.m.