plotGeneEffectVsExpression: Plot gene effect vs. expression

In acidgenomics/DepMapAnalysis: DepMap Analysis Utilities

Plot gene effect vs. expression

Description

Plot gene effect vs. expression

Usage

plotGeneEffectVsExpression(effect, expression, ...)

## S4 method for signature 'GeneEffect,CCLEExpressionData'
plotGeneEffectVsExpression(
  effect,
  expression,
  gene,
  subtype = NULL,
  subtypeCol = "subtype",
  label = !is.null(FALSE)
)

Arguments

effect	GeneEffect.
expression	CCLEExpressionData.
...	Additional arguments.
gene	character(1). Gene identifier.
subtype	character(1) or NULL. Cell subtype name to use for filtering.
subtypeCol	character(1). Column name of metadata defined in colData of effect.
label	logical(1). Superimpose sample text labels on the plot.

Note

Updated 2021-07-15.

Examples

data(crispr)

effect <- crispr
expression <- CCLEExpressionData()

## GeneEffect,CCLEExpressionData ====
gene <- rownames(effect)[[1L]]
plotGeneEffectVsExpression(
    effect = effect,
    expression = expression,
    gene = gene
)

acidgenomics/DepMapAnalysis documentation built on Jan. 26, 2024, 8:21 p.m.