plotGeneEffectVsExpression: Plot gene effect vs. expression

plotGeneEffectVsExpressionR Documentation

Plot gene effect vs. expression

Description

Plot gene effect vs. expression

Usage

plotGeneEffectVsExpression(effect, expression, ...)

## S4 method for signature 'GeneEffect,CCLEExpressionData'
plotGeneEffectVsExpression(
  effect,
  expression,
  gene,
  subtype = NULL,
  subtypeCol = "subtype",
  label = !is.null(FALSE)
)

Arguments

effect

GeneEffect.

expression

CCLEExpressionData.

...

Additional arguments.

gene

character(1). Gene identifier.

subtype

character(1) or NULL. Cell subtype name to use for filtering.

subtypeCol

character(1). Column name of metadata defined in colData of effect.

label

logical(1). Superimpose sample text labels on the plot.

Note

Updated 2021-07-15.

Examples

data(crispr)

effect <- crispr
expression <- CCLEExpressionData()

## GeneEffect,CCLEExpressionData ====
gene <- rownames(effect)[[1L]]
plotGeneEffectVsExpression(
    effect = effect,
    expression = expression,
    gene = gene
)

acidgenomics/DepMapAnalysis documentation built on Jan. 26, 2024, 8:21 p.m.