plotTopGeneEffectPerGroup: Plot top gene effect per group of interest

In acidgenomics/DepMapAnalysis: DepMap Analysis Utilities

Plot top gene effect per group of interest

Description

Plot top gene effect per group of interest

Usage

plotTopGeneEffectPerGroup(object, ...)

## S4 method for signature 'GeneEffect'
plotTopGeneEffectPerGroup(
  object,
  gene,
  group = "subtype",
  n = 10L,
  minNPerGroup = 3L
)

Arguments

object	Object.
...	Additional arguments.
gene	character(1).
group	character(1) or NULL. Column name defined in colData to use for grouping. (e.g. "subtype").
n	integer(1). Number to include.
minNPerGroup	integer(1). Minimum number of samples per group to consider for inclusion in plot.

Value

ggplot.

Note

Updated 2021-07-07.

Examples

data(crispr)

## GeneEffect ====
object <- crispr
gene <- rownames(object)[[1L]]
group <- "subtype"
plotTopGeneEffectPerGroup(object, gene = gene, group = group)

acidgenomics/DepMapAnalysis documentation built on Jan. 26, 2024, 8:21 p.m.